From 84072b577fa6ec1104592af0a640563bf442e164 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jonas=20Mu=CC=88ller?= Date: Thu, 5 Mar 2020 10:35:01 +0100 Subject: [PATCH] based on raw file --- .../fold_0/annotations_test.txt | 10 +- .../fold_0/annotations_train.txt | 29 ++++ .../fold_1/annotations_test.txt | 6 + .../fold_1/annotations_train.txt | 29 ++++ .../fold_2/annotations_test.txt | 37 +++-- .../fold_2/annotations_train.txt | 46 +++--- .../fold_3/annotations_test.txt | 134 ++++++++-------- .../fold_3/annotations_train.txt | 111 ++++++++------ .../fold_4/annotations_test.txt | 82 +++++----- .../fold_4/annotations_train.txt | 111 +++++++++----- prep_cross_validation2.py | 143 ++++++++++++++++++ 11 files changed, 513 insertions(+), 225 deletions(-) create mode 100644 prep_cross_validation2.py diff --git a/data/cross_validate/fold_0/annotations_test.txt b/data/cross_validate/fold_0/annotations_test.txt index e253ea3..095ccda 100644 --- a/data/cross_validate/fold_0/annotations_test.txt +++ b/data/cross_validate/fold_0/annotations_test.txt @@ -11,7 +11,7 @@ IMG_20190404_105415.jpg,1916,1599,1985,1695,caries IMG_20190404_105415.jpg,1686,1029,1778,1103,caries IMG_20190404_105415.jpg,1898,1732,2026,1806,caries IMG_20190404_105415.jpg,3147,1741,3244,1852,caries -IMG_20190404_105415.jpg,3290,979,3442,1084,caries +IMG_20190404_105415.jpg,3290,979,3442,1084,caries10 IMG_20190404_123358.jpg,1032,2072,1336,2312,caries IMG_20190404_123358.jpg,1384,2064,1616,2248,caries IMG_20190404_123358.jpg,848,3200,1112,3400,caries @@ -22,6 +22,14 @@ IMG_20190404_105812.jpg,2830,841,2913,919,caries IMG_20190404_105812.jpg,2922,1034,2987,1094,caries IMG_20190404_105812.jpg,1590,1011,1700,1089,caries IMG_20190404_105812.jpg,1741,1048,1852,1149,caries +IMG_20190404_105436.jpg,2054,1521,2141,1636,caries +IMG_20190404_105436.jpg,2178,1530,2325,1714,caries +IMG_20190404_105436.jpg,2242,1218,2366,1323,caries +IMG_20190404_105436.jpg,2210,1328,2412,1480,caries 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IMG_20190404_105415.jpg,1838,887,1944,974,caries IMG_20190404_105415.jpg,1916,1599,1985,1695,caries @@ -24,6 +25,11 @@ IMG_20190404_101939.jpg,1352,1616,1528,1784,caries IMG_20190404_101939.jpg,1624,1768,1776,1872,caries IMG_20190404_101939.jpg,1200,3408,1336,3528,caries IMG_20190404_101939.jpg,448,1776,584,1888,caries +20190510_121752.jpg,1768,1963,2143,2306,caries +20190510_121752.jpg,3499,2206,3900,2565,caries +20190510_121752.jpg,1779,1615,2064,1837,caries +20190510_121752.jpg,2185,2628,2433,2898,caries +20190510_121752.jpg,3325,2660,3520,2871,caries IMG_20190404_123358.jpg,1032,2072,1336,2312,caries IMG_20190404_123358.jpg,1384,2064,1616,2248,caries IMG_20190404_123358.jpg,848,3200,1112,3400,caries @@ -86,6 +92,9 @@ IMG_20190404_105812.jpg,1741,1048,1852,1149,caries IMG_20190404_103747.jpg,2398,1227,2523,1346,caries IMG_20190404_103747.jpg,3400,1254,3515,1346,caries IMG_20190315_101136.jpg,1789,1643,1946,1813,caries +20190510_121727.jpg,1979,1758,2227,2027,caries 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--git a/data/cross_validate/fold_2/annotations_test.txt b/data/cross_validate/fold_2/annotations_test.txt index df1027a..e65429b 100644 --- a/data/cross_validate/fold_2/annotations_test.txt +++ b/data/cross_validate/fold_2/annotations_test.txt @@ -4,7 +4,6 @@ 20190507_112151.jpg,2549,1758,2834,2011,caries 20190507_112151.jpg,3035,1525,3288,1742,caries 20190507_112151.jpg,1415,1388,1721,1583,caries -IMG_20190315_101136.jpg,1789,1643,1946,1813,caries 20190507_113531.jpg,897,1531,1251,1958,caries 20190507_113531.jpg,1372,1198,1636,1473,caries 20190507_113531.jpg,1652,1156,1937,1351,caries @@ -13,6 +12,8 @@ IMG_20190315_101136.jpg,1789,1643,1946,1813,caries 20190507_113531.jpg,2201,1304,2402,1473,caries 20190507_113531.jpg,2549,1752,2760,1911,caries 20190507_113531.jpg,2507,1926,2766,2095,caries +20190520_103342.jpg,1473,1874,1847,2196,caries +20190520_103342.jpg,1641,1705,1837,1863,caries 20190507_112229.jpg,1140,1235,1499,1488,caries 20190507_112229.jpg,2771,1810,2993,1948,caries 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+IMG_20190401_122015.jpg,721,1429,1015,1539,caries +IMG_20190401_122015.jpg,809,1627,1103,1801,caries +IMG_20190401_122015.jpg,1374,2054,1530,2210,caries +IMG_20190401_122015.jpg,1553,2086,1705,2274,caries +IMG_20190401_122015.jpg,1806,2072,1939,2297,caries +IMG_20190401_122015.jpg,2219,1815,2477,2095,caries +IMG_20190401_122015.jpg,2495,1438,2738,1627,caries +IMG_20190401_122015.jpg,2532,1310,2821,1447,caries +IMG_20190401_122015.jpg,2426,1245,2513,1378,caries +IMG_20190401_122015.jpg,2513,1080,2863,1273,caries +IMG_20190401_122015.jpg,2518,910,2637,1025,caries +IMG_20190401_122015.jpg,2527,712,2849,804,caries +IMG_20190401_122015.jpg,2688,845,2899,970,caries 20190520_120332.jpg,1631,1404,1752,1520,caries 20190520_120332.jpg,1726,1488,1842,1573,caries 20190520_120332.jpg,1605,1525,1736,1673,caries @@ -252,4 +271,14 @@ IMG_20190404_123349.jpg,2031,1360,2238,1507,caries IMG_20190404_123349.jpg,2991,1571,3267,1824,caries IMG_20190404_123349.jpg,3170,1319,3469,1516,caries IMG_20190404_123349.jpg,2008,924,2242,1176,caries +20190510_114813.jpg,1948,1536,2206,1657,caries +20190510_114813.jpg,3716,1536,3959,1726,caries +20190510_114813.jpg,2903,2196,2982,2386,caries +20190510_114813.jpg,1715,1240,1784,1362,caries 20190507_113555.jpg,2470,1821,2792,2021,caries +20190510_121653.jpg,1710,1061,1900,1293,caries +20190510_121653.jpg,3024,1383,3209,1504,caries +20190510_121653.jpg,3035,1320,3140,1378,caries +20190510_121653.jpg,1995,755,2101,897,caries +20190510_121653.jpg,1916,860,2058,1008,caries +20190510_121653.jpg,2829,903,2945,1045,caries diff --git a/prep_cross_validation2.py b/prep_cross_validation2.py new file mode 100644 index 0000000..8d26340 --- /dev/null +++ b/prep_cross_validation2.py @@ -0,0 +1,143 @@ +import copy +import os +from datetime import datetime +from optparse import OptionParser +from pathlib import Path + +from keras_frcnn.simple_parser import get_data + + +def get_date2(filename): + if filename.startswith('IMG'): + filename = filename[4:] + #return filename[:8] # only dates + if filename == '20190508-WA0026.jpg': + filename = '20190508_123000.jpg' + return filename[:13] + +def get_date(filename): + return get_date2(filename)[:-5] + + +#20190520_120309 +def time_diff(date1, date2): + date1 = get_date2(date1) + date2 = get_date2(date2) + d1 = datetime.strptime(date1, '%Y%m%d_%H%M') + d2 = datetime.strptime(date2, '%Y%m%d_%H%M') + tmp = None + if d1 < d2: + tmp = d1 + d1 = d2 + d2 = tmp + duration = d1 - d2 # For build-in functions + duration_in_s = duration.total_seconds() + return duration_in_s, d1, d2 + #if duration_in_s < 600: + # print(duration_in_s) + # print() + +parser = OptionParser() + +parser.add_option("-p", "--path", dest="annotation_all", help="Reference to file with all annotated images and bboxes. (Simple Format needed)") +parser.add_option("-n", "--num_folds", type="int", dest="num_folds", + help="Number of folds for the dataset. ", default=5) +(options, args) = parser.parse_args() + +output_path = 'data/cross_validate/' + +if not options.annotation_all: # if filename is not given + parser.error('Error: path to annotation file data must be specified. Pass --path to command line') + +all_data, classes_count, class_mapping = get_data(options.annotation_all) +dates = {} + +index_dict = {} +for idx, entry in enumerate(all_data): + filename = Path(entry['filepath']).name + date = get_date(filename) + print(date) + if date not in dates.keys(): + dates[date] = [idx] + else: + dates[date].append(idx) + index_dict[idx] = (filename, entry['filepath']) + +print(dates) +# print(index_dict) + +len_of_dates = {} +for date in dates.keys(): + if len(dates[date]) not in len_of_dates.keys(): + len_of_dates[len(dates[date])] = [date] + else: + len_of_dates[len(dates[date])].append(date) + +print(len_of_dates) + +# prepare ordered list containing the appearing length in the dataset +keys_of_len_of_dates = list(len_of_dates.keys()) +keys_of_len_of_dates.sort(reverse=True) + +# Create empty lists for each fold as sublist of folds +folds = [] +for i in range(options.num_folds): + folds.append([]) + +# Append always the next longest sublist to the next shortest fold +for key in keys_of_len_of_dates: + for date in len_of_dates[key]: + #find first min len fold + min_fold = 0 + for idx, fold in enumerate(folds): + if len(fold) < len(folds[min_fold]): + min_fold = idx + folds[min_fold].extend(dates[date]) +#print(folds) + +for fold in folds: + fold.sort() + print('len', len(fold)) + print(fold) + +train = {} +test = {} +for i in range(len(folds)): + test[i] = copy.deepcopy(folds[i]) + for j in range(len(folds)): + if i != j: + if i not in train.keys(): + train[i] = copy.deepcopy(folds[j]) + else: + train[i].extend(folds[j]) + train[i].sort() + test[i].sort() + +#visualize what was done: +for i in range(len(folds)): + print('train') + print(train[i]) + print('test') + print(test[i]) + print() + + +# write to files +for i in range(len(folds)): + new_dir = output_path+'fold_'+str(i) + if not os.path.exists(new_dir): + os.makedirs(new_dir) + + with open(new_dir+'/annotations_test.txt', 'w') as file: + lines = [] + for filenumber in test[i]: + for box in all_data[filenumber]['bboxes']: + lines.append(index_dict[filenumber][0] + ',' + str(box['x1']) + ',' + str(box['y1']) + ',' + str(box['x2']) + ',' + str(box['y2']) + ',' + box['class'] + '\n') + file.writelines(lines) + + with open(new_dir+'/annotations_train.txt', 'w') as file: + lines = [] + for filenumber in train[i]: + for box in all_data[filenumber]['bboxes']: + lines.append(index_dict[filenumber][0] + ',' + str(box['x1']) + ',' + str(box['y1']) + ',' + str(box['x2']) + ',' + str(box['y2']) + ',' + box['class'] + '\n') + file.writelines(lines) \ No newline at end of file -- GitLab