d

RobinNet/mrunetpred_gts.py

@@ -179,6 +179,7 @@ def main():
 
 
             if npys3d:
+                y_pred3d = np.flip(y_pred3d)
                 #np.save(img_savepath + "P" + str(TP_num).zfill(2) + "_pred3D", y_pred3d)
                 np.save("data/npy_thresh/" + "P" + str(TP_num).zfill(2) + "_mr_ctunetpred.gipl", y_pred3d)
                 print("ypred shape: ", np.shape(y_pred3d))

RobinNet/tryOut.py

@@ -10,11 +10,11 @@ from scipy import ndimage
 from datetime import datetime
 
 
-img = np.load("data/npy_thresh/P01_mr_ctunetpred.gipl.npy")
+img = np.load("data/npy_thresh/P01_250_thresh.gipl.npy")
 print(np.shape(img))
-
-plt.imshow(img[10,:, :], cmap=plt.cm.bone)
-plt.show()
+for i in range(np.shape(img)[0]):
+    plt.imshow(img[i,:, :], cmap=plt.cm.bone)
+    plt.show()
 
 '''mr_img = np.load("data/npy/P03_mr_T1.gipl.npy")
 ct_img = np.load("data/npy/P03_mr_ctseg_gt.gipl.npy")